Publications
Discover the contributions our lab has made to the proteomics community
Important: please cite NIH grant S10 OD010669 in all publications utilizing services from the IIGB Proteomics Core.
(updated October 14, 2024)
2024
Flesher, D. A., Liu, J., Wang, J., Gisriel, C. J., Yang, K. R., Batista, V. S., Debus, R. J., & Brudvig, G. W. (2024). Mutation-induced shift of the photosystem II active site reveals insight into conserved water channels. The Journal of biological chemistry, 300(7), 107475. https://doi.org/10.1016/j.jbc.2024.107475. Link
2023
Deans JR, Deol P, Titova N, Radi SH, Vuong LM, Evans JR, Pan S, Fahrmann J, Yang J, Hammock BD, Fiehn O, Fekry B, Eckel-Mahan K and Sladek FM (2023) HNF4α isoforms regulate the circadian balance between carbohydrate and lipid metabolism in the liver. Front. Endocrinol. 14:1266527. doi: 10.3389/fendo.2023.1266527. PMID: 38111711 PMCID: PMC10726135. Link
Ziting Gao, Zongbo Li, Zachary Hutchins, Quanqing Zhang and Wenwan Zhong. Enhancing Extracellular Vesicle Analysis by Integration of Large-Volume Sample Stacking in Capillary Electrophoresis with Asymmetrical Flow Field-Flow Fractionation Analytical chemistry vol. 95,42 (2023): 15778-15785. doi:10.1021/acs.analchem.3c03303. PMID: 37795969 PMCID: PMC10947528. Link
Bhattacharya O, Ortiz I, Hendricks N, Walling LL. The tomato chloroplast stromal proteome compendium elucidated by leveraging a plastid protein-localization prediction Atlas. Front Plant Sci. 2023 Aug 28;14:1020275. doi: 10.3389/fpls.2023.1020275. PMID: 37701797; PMCID: PMC10493611. Link
Madahar V, Dang R, Zhang Q, Liu C, Rodgers VGJ, Liao J. Human Post-Translational SUMOylation Modification of SARS-CoV-2 Nucleocapsid Protein Enhances Its Interaction Affinity with Itself and Plays a Critical Role in Its Nuclear Translocation. Viruses. 2023 Jul 21;15(7):1600. doi: 10.3390/v15071600. PMID: 37515286; PMCID: PMC10384427. Link
Lee CH, Tang JC, Hendricks NG, Anvari B. Proteomes of Micro- and Nanosized Carriers Engineered from Red Blood Cells. J Proteome Res. 2023 Mar 3; 22(3):896-907. doi: 10.1021/acs.jproteome.2c00695. Epub 2023 Feb 15. PMID:36792548. Link
2022
Dulin H, Hendricks N, Xu D, Gao L, Wuang K, Ai H, Hai R. Impact of Protein Nitration on Influenza Virus Infectivity and Immunogenicity. Microbiol Spectr. 2022 Dec 21;10(6):e0190222. doi: 10.1128/spectrum.01902-22. Epub 2022 Oct 31. PMID: 36314966; PMCID: PMC9769652. Link
DeLoid GM, Cao X, Coreas R, Bitounis D, Singh D, Zhong W, Demokritou P. Incineration-Generated Polyethylene Micro-Nanoplastics Increase Triglyceride Lipolysis and Absorption in an In Vitro Small Intestinal Epithelium Model. Environ Sci Technol. 2022 Sep 6;56(17):12288-12297. doi: 10.1021/acs.est.2c03195. Epub 2022 Aug 16. PMID: 35973094; PMCID: PMC9559972. Link
Coreas R, Castillo C, Li Z, Yan D, Gao Z, Chen J, Bitounis D, Parviz D, Strano MS, Demokritou P, Zhong W. Biological Impacts of Reduced Graphene Oxide Affected by Protein Corona Formation. Chem Res Toxicol. 2022 Jul18; 35(7):1244-1256. doi: 10.1021/acs.chemrestox.2c00042. Epub 2022 Jun 15. PMID:35706338; PMCID: PMC9842398. Link
Yue P, Zhu Y, Brotherton-Pleiss C, Fu W, Verma N, Chen J, Nakamura K, Chen W, Chen Y, Alonso-Valenteen F, Mikhael S, Medina-Kauwe L, Kershaw KM, Celeridad M, Pan S, Limpert AS, Sheffler DJ, Cosford NDP, Shiao SL, Tius MA, Lopez-Tapia F, Turkson J. Novel potent azetidine-based compounds irreversibly inhibit Stat3 activation and induce antitumor response against human breast tumor growth in vivo. Cancer Lett. 2022 May 28; 534:215613. doi:10.1016/j.canlet.2022.215613. Epub 2022 Mar 9. PMID: 35276290; PMCID: PMC9867837. Link
Fote GM, Geller NR, Efstathiou NE, Hendricks N, Vavvas DG, Reidling JC, Thompson LM, Steffan JS. Isoform-dependent lysosomal degradation and internalization of apolipoprotein E requires autophagy proteins. J Cell Sci. 2022 Jan 15;135(2):jcs258687. doi: 10.1242/jcs.258687. Epub 2022 Jan 25. PMID: 34982109; PMCID: PMC8917355. Link
2021
Quanrud GM, Montoya MR, Mei L, Awad MR, Genereux JC. Hsp40 Affinity to Identify Proteins Destabilized by Cellular Toxicant Exposure. Anal Chem. 2021 Dec 21;93(50):16940-16946. doi: 10.1021/acs.analchem.1c04230. Epub 2021 Dec 7. PMID: 34874156; PMCID: PMC9942771. Link
Tang J, Zhao W, Hendricks NG, Zhao L. High-Resolution Mapping of Amino Acid Residues in DNA-Protein Cross-Links Enabled by Ribonucleotide-Containing DNA. Anal Chem. 2021 Oct 5;93(39):13398-13406. doi: 10.1021/acs.analchem.1c03481. Epub 2021 Sep 24. PMID: 34559515; PMCID: PMC8772389. Link
Dejonghe W, Vaidya AS, Alfred SE, Cutler SR. In Planta Labeling Using a Clickable ER-Disrupting Probe Suggests a Role for Oleosins in Arabidopsis Seedling ER Integrity. ACS Chem Biol. 2021 Nov 19;16(11):2151-2157. doi: 10.1021/acschembio.1c00607. Epub 2021 Sep 10. PMID: 34505514. Link
2020
Coreas R, Cao X, Deloid GM, Demokritou P, Zhong W. Lipid and protein corona of food-grade TiO2 nanoparticles in simulated gastrointestinal digestion. NanoImpact. 2020 Oct;20:100272. doi: 10.1016/j.impact.2020.100272. Epub 2020 Nov 3. PMID: 33344797; PMCID: PMC7742882. Link
Collier LA, Ghosh A, Borkovich KA. Heterotrimeric G-Protein Signaling Is Required for Cellulose Degradation in Neurospora crassa. mBio. 2020 Nov 24;11(6):e02419-20. doi: 10.1128/mBio.02419-20. PMID: 33234686; PMCID: PMC7701987. Link
Bhattacharya O, Ortiz I, Walling LL. Methodology: an optimized, high-yield tomato leaf chloroplast isolation and stroma extraction protocol for proteomics analyses and identification of chloroplast co-localizing proteins. Plant Methods. 2020 Sep 24;16:131. doi: 10.1186/s13007-020-00667-5. PMID: 32983250; PMCID: PMC7513546. Link
Nair V, Tran M, Behar RZ, Zhai S, Cui X, Phandthong R, Wang Y, Pan S, Luo W, Pankow JF, Volz DC, Talbot P. Menthol in electronic cigarettes: A contributor to respiratory disease? Toxicol Appl Pharmacol. 2020 Nov 15;407:115238. doi: 10.1016/j.taap.2020.115238. Epub 2020 Sep 17. PMID: 32950532; PMCID: PMC8167901. Link
Lai Y, Lu XM, Daron J, Pan S, Wang J, Wang W, Tsuchiya T, Holub E, McDowell JM, Slotkin RK, Le Roch KG, Eulgem T. The Arabidopsis PHD-finger protein EDM2 has multiple roles in balancing NLR immune receptor gene expression. PLoS Genet. 2020 Sep 14;16(9):e1008993. doi: 10.1371/journal.pgen.1008993. PMID: 32925902; PMCID: PMC7529245. Link
2019
Contreras E, Masuyer G, Qureshi N, Chawla S, Dhillon HS, Lee HL, Chen J, Stenmark P, Gill SS. A neurotoxin that specifically targets Anopheles mosquitoes. Nat Commun. 2019 Jun 28;10(1):2869. doi: 10.1038/s41467-019-10732-w. PMID: 31253776; PMCID: PMC6599013. Link
Vuong LM, Pan S, Donovan PJ. Proteome Profile of Endogenous Retrotransposon-Associated Complexes in Human Embryonic Stem Cells. Proteomics. 2019 Aug;19(15):e1900169. doi: 10.1002/pmic.201900169. Epub 2019 Jul 18. PMID: 31219246; PMCID: PMC8054700. Link
2018
Arvidson R, Kaiser M, Lee SS, Urenda JP, Dail C, Mohammed H, Nolan C, Pan S, Stajich JE, Libersat F, Adams ME. Parasitoid Jewel Wasp Mounts Multipronged Neurochemical Attack to Hijack a Host Brain. Mol Cell Proteomics. 2019 Jan;18(1):99-114. doi: 10.1074/mcp.RA118.000908. Epub 2018 Oct 6. PMID: 30293061; PMCID: PMC6317478. Link
2016
Mori-Quiroz LM, Clift MD. Exploiting Alkylquinone Tautomerization: Amine Benzylation. Org Lett. 2016 Jul 15;18(14):3446-9. doi:10.1021/acs.orglett.6b01629. Epub 2016 Jun 28. PMID: 27351334. Link